Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AEKFJCGL_2 | 218785 | 220710 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| AEKFJCGL_62 | 211 | 948 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AEKFJCGL_2 | 218785 | 220710 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| AEKFJCGL_62 | 211 | 948 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | U18931 |
| AEKFJCGL_1 | 610737 | 611954 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
| AEKFJCGL_1 | 373434 | 374384 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| AEKFJCGL_1 | 373434 | 374384 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| AEKFJCGL_1 | 373434 | 374384 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| AEKFJCGL_1 | 373434 | 374384 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AEKFJCGL_2 | 218788 | 220710 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| AEKFJCGL_62 | 211 | 945 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002292226.1 |
| AEKFJCGL_1 | 610734 | 611954 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| AEKFJCGL_1 | 373433 | 374386 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AEKFJCGL_1 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_2 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_5 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_6 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_7 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_8 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_9 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_10 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_11 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_12 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_13 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_14 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_15 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_16 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_17 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_18 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_19 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_20 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_21 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_22 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_23 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_24 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_25 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_26 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_27 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_28 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_29 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_30 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_31 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_32 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_33 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_34 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_35 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_36 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_37 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_38 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_39 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_40 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_41 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_42 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_43 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_44 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_45 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_46 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_47 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_48 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_49 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_50 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_51 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_53 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_54 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_55 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_56 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_57 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_58 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_59 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_60 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_61 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_62 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_63 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_64 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_65 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_66 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_67 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_68 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_69 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_70 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_71 | 1.0 | 0.0 | 1.0 |
| AEKFJCGL_72 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_73 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_80 | 0.0 | 1.0 | 0.0 |
| AEKFJCGL_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AEKFJCGL_15 | 111279 | 113784 | False | Unknown | VOG0275 |
| AEKFJCGL_23 | 52062 | 58833 | False | Unknown | VOG8909, |
| AEKFJCGL_36 | 91128 | 92811 | False | Unknown | VOG4552 |
| AEKFJCGL_36 | 138763 | 148636 | False | Siphoviridae | VOG5931, |
| AEKFJCGL_36 | 186512 | 191906 | False | Unknown | VOG0226, |
| AEKFJCGL_39 | 5283 | 13429 | False | Unknown | VOG0572, |
| AEKFJCGL_69 | 285387 | 295790 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)