Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OJNPAHGG_78 | 218785 | 220710 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| OJNPAHGG_53 | 1274 | 2011 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OJNPAHGG_78 | 218785 | 220710 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| OJNPAHGG_53 | 1274 | 2011 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | U18931 |
| OJNPAHGG_12 | 10020 | 11237 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
| OJNPAHGG_12 | 247590 | 248540 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| OJNPAHGG_12 | 247590 | 248540 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| OJNPAHGG_12 | 247590 | 248540 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| OJNPAHGG_12 | 247590 | 248540 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OJNPAHGG_78 | 218788 | 220710 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| OJNPAHGG_53 | 1277 | 2011 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002292226.1 |
| OJNPAHGG_12 | 10020 | 11240 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| OJNPAHGG_12 | 247588 | 248541 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OJNPAHGG_1 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_2 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_3 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_4 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_5 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_6 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_7 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_8 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_9 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_10 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_11 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_12 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_13 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_14 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_15 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_16 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_17 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_18 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_19 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_20 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_21 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_22 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_23 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_24 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_25 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_26 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_27 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_28 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_29 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_30 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_31 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_32 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_33 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_34 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_35 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_36 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_37 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_38 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_39 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_40 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_41 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_43 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_44 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_45 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_46 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_47 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_48 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_49 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_50 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_51 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_52 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_53 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_54 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_55 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_56 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_57 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_58 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_59 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_60 | 1.0 | 0.0 | 1.0 |
| OJNPAHGG_67 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_78 | 0.0 | 1.0 | 0.0 |
| OJNPAHGG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OJNPAHGG_10 | 19683 | 22188 | False | Unknown | VOG0275 |
| OJNPAHGG_18 | 5230 | 12001 | False | Unknown | VOG0572, |
| OJNPAHGG_31 | 4306 | 14653 | False | Unknown | VOG3992, |
| OJNPAHGG_45 | 189637 | 195031 | False | Unknown | VOG0189, |
| OJNPAHGG_45 | 232907 | 243999 | False | Siphoviridae | VOG6280, |
| OJNPAHGG_45 | 288732 | 290415 | False | Unknown | VOG0275 |
| OJNPAHGG_67 | 285387 | 295790 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)