Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHDJLGCA_68 | 216849 | 218054 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JHDJLGCA_121 | 13831 | 15804 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| JHDJLGCA_138 | 3059 | 4225 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| JHDJLGCA_138 | 1475 | 2701 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| JHDJLGCA_150 | 1032 | 1832 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| JHDJLGCA_138 | 411 | 1274 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| JHDJLGCA_150 | 5 | 829 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JHDJLGCA_150 | 5 | 829 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| JHDJLGCA_121 | 13879 | 15804 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| JHDJLGCA_138 | 3059 | 4225 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| JHDJLGCA_150 | 1032 | 1832 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| JHDJLGCA_138 | 1475 | 2701 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JHDJLGCA_138 | 411 | 1271 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| JHDJLGCA_150 | 5 | 826 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| JHDJLGCA_68 | 218079 | 218588 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JHDJLGCA_121 | 13879 | 15801 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| JHDJLGCA_138 | 3059 | 4222 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| JHDJLGCA_68 | 216849 | 218051 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JHDJLGCA_150 | 1035 | 1832 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| JHDJLGCA_138 | 1478 | 2701 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JHDJLGCA_146 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JHDJLGCA_1 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_2 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_3 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_4 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_5 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_6 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_7 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_8 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_10 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_11 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_12 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_13 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_24 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_35 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_46 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_57 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_64 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_65 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_66 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_67 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_68 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_69 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_70 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_71 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_72 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_73 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_74 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_75 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_76 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_77 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_78 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_79 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_80 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_81 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_82 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_83 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_84 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_85 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_86 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_87 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_88 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_89 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_90 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_91 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_92 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_93 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_94 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_95 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_96 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_97 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_98 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_99 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_100 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_101 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_102 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_103 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_104 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_105 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_106 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_107 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_108 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_109 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_110 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_111 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_112 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_113 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_114 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_115 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_116 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_117 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_118 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_119 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_120 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_121 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_122 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_123 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_124 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_125 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_126 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_127 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_128 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_129 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_130 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_131 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_132 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_133 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_134 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_135 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_136 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_137 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_138 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_139 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_140 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_141 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_142 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_143 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_144 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_145 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_146 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_147 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_149 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_150 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_151 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_152 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_153 | 0.0 | 1.0 | 0.0 |
| JHDJLGCA_154 | 1.0 | 0.0 | 1.0 |
| JHDJLGCA_155 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JHDJLGCA_78 | 30831 | 39016 | False | Unknown | VOG4573, |
Phigaro v2.4.0 (Database: Jan. 2024 release)