Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKMJGAA_67 | 216849 | 218054 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| PBKMJGAA_135 | 3702 | 4565 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| PBKMJGAA_117 | 3059 | 5032 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| PBKMJGAA_135 | 2275 | 3501 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| PBKMJGAA_143 | 1054 | 1878 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| PBKMJGAA_135 | 751 | 1917 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| PBKMJGAA_143 | 51 | 851 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBKMJGAA_143 | 1054 | 1878 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| PBKMJGAA_117 | 3059 | 4984 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| PBKMJGAA_135 | 751 | 1917 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| PBKMJGAA_143 | 51 | 851 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| PBKMJGAA_135 | 2275 | 3501 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBKMJGAA_135 | 3705 | 4565 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| PBKMJGAA_143 | 1057 | 1878 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| PBKMJGAA_67 | 218079 | 218588 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| PBKMJGAA_117 | 3062 | 4984 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| PBKMJGAA_135 | 754 | 1917 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| PBKMJGAA_67 | 216849 | 218051 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| PBKMJGAA_143 | 51 | 848 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| PBKMJGAA_135 | 2275 | 3498 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PBKMJGAA_140 | 1 | 644 | repUS2 | 646 / 681 | 98.76 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBKMJGAA_1 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_2 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_3 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_5 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_6 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_7 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_13 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_24 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_35 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_46 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_57 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_63 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_64 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_65 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_66 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_67 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_68 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_69 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_70 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_71 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_72 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_73 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_74 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_75 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_76 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_77 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_78 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_79 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_80 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_81 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_82 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_83 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_84 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_85 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_86 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_87 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_88 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_89 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_90 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_91 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_92 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_93 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_94 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_95 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_96 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_97 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_98 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_99 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_100 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_101 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_102 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_103 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_104 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_105 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_106 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_107 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_108 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_109 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_110 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_111 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_112 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_113 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_114 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_115 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_116 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_117 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_118 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_119 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_120 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_121 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_122 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_123 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_124 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_125 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_126 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_127 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_128 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_129 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_130 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_131 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_132 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_133 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_134 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_135 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_136 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_137 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_138 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_139 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_140 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_141 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_142 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_143 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_144 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_145 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_147 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_148 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_149 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_150 | 0.0 | 1.0 | 0.0 |
| PBKMJGAA_151 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_152 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_153 | 1.0 | 0.0 | 1.0 |
| PBKMJGAA_154 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBKMJGAA_79 | 45265 | 53450 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)