Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGFNCKLL_226 | 65440 | 67365 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| CGFNCKLL_203 | 6544 | 7278 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| CGFNCKLL_52 | 2147 | 2947 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CGFNCKLL_203 | 6544 | 7278 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| CGFNCKLL_226 | 65440 | 67365 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| CGFNCKLL_52 | 2147 | 2947 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| CGFNCKLL_135 | 71760 | 72710 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| CGFNCKLL_135 | 71760 | 72710 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| CGFNCKLL_135 | 71760 | 72710 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| CGFNCKLL_135 | 71760 | 72710 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CGFNCKLL_203 | 6547 | 7278 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| CGFNCKLL_226 | 65440 | 67362 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| CGFNCKLL_52 | 2150 | 2947 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| CGFNCKLL_135 | 71758 | 72711 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CGFNCKLL_100 | 2046 | 2626 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CGFNCKLL_1 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_2 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_3 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_4 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_5 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_6 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_7 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_8 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_9 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_10 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_11 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_12 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_13 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_14 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_15 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_16 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_17 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_18 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_19 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_20 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_21 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_22 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_23 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_24 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_25 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_26 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_27 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_28 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_29 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_30 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_31 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_32 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_33 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_34 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_35 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_36 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_37 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_38 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_39 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_40 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_41 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_42 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_43 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_44 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_45 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_46 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_47 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_48 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_49 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_50 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_51 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_52 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_53 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_54 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_55 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_56 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_57 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_58 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_59 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_60 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_61 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_62 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_63 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_64 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_65 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_66 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_68 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_69 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_70 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_71 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_72 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_73 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_74 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_75 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_76 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_77 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_78 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_79 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_80 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_81 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_82 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_83 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_84 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_85 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_86 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_87 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_88 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_89 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_90 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_91 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_92 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_93 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_94 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_95 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_96 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_97 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_98 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_99 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_100 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_101 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_102 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_103 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_104 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_105 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_106 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_107 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_108 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_109 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_110 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_111 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_112 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_113 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_114 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_115 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_116 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_117 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_118 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_119 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_120 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_121 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_122 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_123 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_124 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_125 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_126 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_127 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_128 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_129 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_130 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_131 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_132 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_135 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_146 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_157 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_166 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_167 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_168 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_169 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_170 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_171 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_172 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_173 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_174 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_175 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_176 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_177 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_178 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_179 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_180 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_181 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_182 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_183 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_184 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_185 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_186 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_187 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_188 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_189 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_190 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_191 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_192 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_193 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_194 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_195 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_196 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_197 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_198 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_199 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_200 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_201 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_202 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_203 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_204 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_205 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_206 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_207 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_208 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_209 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_210 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_211 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_212 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_213 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_214 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_215 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_216 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_217 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_218 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_219 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_220 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_221 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_222 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_223 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_224 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_225 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_226 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_227 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_228 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_229 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_230 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_231 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_232 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_233 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_234 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_235 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_236 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_237 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_238 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_239 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_240 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_241 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_242 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_243 | 1.0 | 0.0 | 1.0 |
| CGFNCKLL_244 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_245 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_246 | 0.0 | 1.0 | 0.0 |
| CGFNCKLL_247 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CGFNCKLL_79 | 76080 | 84277 | False | Unknown | VOG5562, |
| CGFNCKLL_182 | 17153 | 21418 | False | Unknown | VOG0094, |
| CGFNCKLL_193 | 138084 | 148896 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)