Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHFCBHMG_164 | 6544 | 7278 | ErmG | ARO:3000522 | ErmG | 100.00 | 100.00 | L42817.1 |
| GHFCBHMG_27 | 2147 | 2947 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHFCBHMG_164 | 6544 | 7278 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | L42817 |
| GHFCBHMG_27 | 2147 | 2947 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GHFCBHMG_2 | 126941 | 127891 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| GHFCBHMG_2 | 126941 | 127891 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| GHFCBHMG_2 | 126941 | 127891 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| GHFCBHMG_2 | 126941 | 127891 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHFCBHMG_164 | 6547 | 7278 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | EXACTX | 100.00 | 100.00 | WP_063844787.1 |
| GHFCBHMG_27 | 2150 | 2947 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| GHFCBHMG_2 | 126939 | 127892 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GHFCBHMG_43 | 158 | 738 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHFCBHMG_1 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_2 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_3 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_4 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_5 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_6 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_7 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_8 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_9 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_10 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_11 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_12 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_13 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_14 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_15 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_16 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_17 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_18 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_19 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_20 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_21 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_22 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_23 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_24 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_25 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_26 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_27 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_28 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_29 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_30 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_31 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_32 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_33 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_34 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_35 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_36 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_38 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_39 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_40 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_41 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_42 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_43 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_44 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_45 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_46 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_47 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_48 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_49 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_50 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_51 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_52 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_53 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_54 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_55 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_56 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_57 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_58 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_60 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_61 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_62 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_63 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_64 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_65 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_66 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_68 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_79 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_90 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_101 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_112 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_113 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_120 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_121 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_122 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_123 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_124 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_125 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_126 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_127 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_128 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_129 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_130 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_131 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_132 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_133 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_134 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_135 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_136 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_137 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_138 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_139 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_140 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_141 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_142 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_143 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_144 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_145 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_146 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_147 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_148 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_149 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_150 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_151 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_152 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_153 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_154 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_155 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_156 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_157 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_158 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_159 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_160 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_161 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_162 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_163 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_164 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_165 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_166 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_167 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_168 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_169 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_170 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_171 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_172 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_173 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_174 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_175 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_176 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_177 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_178 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_179 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_180 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_181 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_182 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_183 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_184 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_185 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_186 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_187 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_188 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_189 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_190 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_191 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_192 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_193 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_194 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_195 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_196 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_197 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_198 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_199 | 1.0 | 0.0 | 1.0 |
| GHFCBHMG_200 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_201 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_202 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_203 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_204 | 0.0 | 1.0 | 0.0 |
| GHFCBHMG_205 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHFCBHMG_90 | 9975 | 17380 | False | Unknown | VOG0226, |
| GHFCBHMG_127 | 56887 | 64372 | False | Siphoviridae | VOG9606, |
| GHFCBHMG_151 | 156488 | 160753 | False | Unknown | VOG4567, |
| GHFCBHMG_162 | 138028 | 148840 | False | Unknown | VOG3992, |
Phigaro v2.4.0 (Database: Jan. 2024 release)