Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFGOKFON_10 | 31326 | 33251 | tet(Q) | ARO:3000191 | tet(Q) | 96.88 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AFGOKFON_10 | 31326 | 33251 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.90 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AFGOKFON_10 | 31326 | 33248 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.84 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AFGOKFON_1 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_2 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_3 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_4 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_5 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_6 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_7 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_8 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_9 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_10 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_11 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_12 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_13 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_14 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_15 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_16 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_17 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_18 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_19 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_20 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_21 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_22 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_23 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_24 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_25 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_26 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_27 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_28 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_29 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_30 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_31 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_32 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_33 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_34 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_35 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_36 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_37 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_38 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_39 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_40 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_41 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_42 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_43 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_44 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_45 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_46 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_47 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_48 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_49 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_50 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_51 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_53 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_54 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_55 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_56 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_57 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_58 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_59 | 1.0 | 0.0 | 1.0 |
| AFGOKFON_66 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_77 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_88 | 0.0 | 1.0 | 0.0 |
| AFGOKFON_97 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AFGOKFON_4 | 9770 | 15293 | False | Siphoviridae | VOG0204, |
| AFGOKFON_5 | 114386 | 123293 | False | Siphoviridae | VOG0204, |
| AFGOKFON_27 | 6152 | 16861 | False | Siphoviridae | VOG7238, |
| AFGOKFON_97 | 166820 | 175017 | False | Unknown | VOG5562, |
Phigaro v2.4.0 (Database: Jan. 2024 release)