Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFJMOAGK_7 | 189277 | 190941 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 84.32 | Z21523.1 |
| EFJMOAGK_35 | 9619 | 10584 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| EFJMOAGK_42 | 3 | 1667 | tet(Q) | ARO:3000191 | tet(Q) | 95.85 | 84.32 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EFJMOAGK_7 | 189277 | 190943 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 86.55 | Z21523 |
| EFJMOAGK_35 | 9619 | 10584 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| EFJMOAGK_35 | 9619 | 10584 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| EFJMOAGK_35 | 9619 | 10584 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| EFJMOAGK_35 | 9619 | 10584 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| EFJMOAGK_18 | 53122 | 53915 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 83.67 | 98.88 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EFJMOAGK_35 | 9622 | 10584 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| EFJMOAGK_7 | 189280 | 190941 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 100.00 | 86.43 | WP_002560998.1 |
| EFJMOAGK_42 | 3 | 1664 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 99.46 | 86.43 | WP_063856407.1 |
| EFJMOAGK_18 | 53118 | 53915 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 80.83 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EFJMOAGK_57 | 1635 | 2314 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EFJMOAGK_1 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_2 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_3 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_4 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_5 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_6 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_7 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_8 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_9 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_10 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_11 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_12 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_13 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_14 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_15 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_16 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_17 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_18 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_19 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_20 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_21 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_22 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_23 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_24 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_25 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_26 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_27 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_28 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_29 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_30 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_31 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_32 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_33 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_34 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_35 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_36 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_37 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_38 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_39 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_40 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_41 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_42 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_43 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_44 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_45 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_46 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_47 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_48 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_49 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_50 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_51 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_52 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_53 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_54 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_55 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_56 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_57 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_59 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_60 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_61 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_62 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_63 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_64 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_66 | 1.0 | 0.0 | 1.0 |
| EFJMOAGK_67 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_68 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_69 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_78 | 0.0 | 1.0 | 0.0 |
| EFJMOAGK_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EFJMOAGK_23 | 275590 | 283455 | False | Unknown | VOG10904, |
| EFJMOAGK_24 | 30127 | 34729 | False | Unknown | VOG4544, |
Phigaro v2.4.0 (Database: Jan. 2024 release)