Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNLFACFB_18 | 89646 | 90461 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| PNLFACFB_18 | 87946 | 88782 | APH(6)-Id | ARO:3002660 | APH(6)-Id | 99.28 | 100.00 | AF024602.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PNLFACFB_18 | 88782 | 89585 | aph(3'')-Ib | Streptomycin | 100.00 | 100.00 | AF321551 |
| PNLFACFB_18 | 87946 | 88776 | aph(6)-Id | Streptomycin | 100.00 | 100.00 | CP000971 |
| PNLFACFB_18 | 89646 | 90461 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PNLFACFB_18 | 88785 | 89585 | aph(3'')-Ib | aminoglycoside O-phosphotransferase APH(3'')-Ib | EXACTX | 100.00 | 100.00 | WP_001082319.1 |
| PNLFACFB_18 | 87949 | 88782 | aph(6)-Id | aminoglycoside O-phosphotransferase APH(6)-Id | EXACTX | 100.00 | 100.00 | WP_000480972.1 |
| PNLFACFB_18 | 89649 | 90461 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNLFACFB_1 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_2 | 1.0 | 0.0 | 1.0 |
| PNLFACFB_3 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_4 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_5 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_6 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_7 | 1.0 | 0.0 | 1.0 |
| PNLFACFB_8 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_9 | 1.0 | 0.0 | 1.0 |
| PNLFACFB_10 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_11 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_12 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_13 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_14 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_15 | 1.0 | 0.0 | 1.0 |
| PNLFACFB_16 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_17 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_18 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_19 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_20 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_21 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_22 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_23 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_24 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_25 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_26 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_27 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_28 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_29 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_30 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_31 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_32 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_33 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_34 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_35 | 1.0 | 0.0 | 1.0 |
| PNLFACFB_36 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_37 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_38 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_39 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_40 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_41 | 0.0 | 1.0 | 0.0 |
| PNLFACFB_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)