Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 1 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCMLDPMP_311 | 48965 | 50101 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| OCMLDPMP_311 | 47926 | 48789 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| OCMLDPMP_46 | 2133 | 2867 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| OCMLDPMP_53 | 113 | 928 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| OCMLDPMP_33 | 1 | 1629 | tet(Q) | ARO:3000191 | tet(Q) | 97.42 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OCMLDPMP_53 | 113 | 928 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| OCMLDPMP_311 | 48965 | 50131 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| OCMLDPMP_46 | 2133 | 2867 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| OCMLDPMP_46 | 55 | 1361 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.40 | 89.21 | AF227520 |
| OCMLDPMP_33 | 1 | 1630 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.36 | 84.63 | Z21523 |
| OCMLDPMP_371 | 348 | 1562 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCMLDPMP_311 | 47929 | 48789 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OCMLDPMP_319 | 6202 | 7107 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| OCMLDPMP_53 | 113 | 925 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| OCMLDPMP_311 | 48968 | 50131 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| OCMLDPMP_46 | 2133 | 2864 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| OCMLDPMP_33 | 1 | 1629 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.42 | 84.71 | WP_002560998.1 |
| OCMLDPMP_371 | 339 | 1562 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| OCMLDPMP_311 | 50303 | 51052 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | PARTIALX | 99.60 | 65.96 | WP_204376222.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCMLDPMP_135 | 76957 | 75377 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OCMLDPMP_52 | 413 | 993 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCMLDPMP_1 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_2 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_3 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_4 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_5 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_6 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_7 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_8 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_9 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_10 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_11 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_12 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_13 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_14 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_15 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_16 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_17 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_18 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_19 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_20 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_21 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_22 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_23 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_24 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_25 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_26 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_27 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_28 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_29 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_30 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_31 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_32 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_33 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_34 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_35 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_36 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_37 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_38 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_39 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_40 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_41 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_42 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_43 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_44 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_45 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_46 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_47 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_48 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_49 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_50 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_51 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_57 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_68 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_79 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_90 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_101 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_112 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_113 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_124 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_135 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_146 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_157 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_168 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_179 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_190 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_201 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_212 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_223 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_224 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_235 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_246 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_257 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_268 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_279 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_290 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_301 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_310 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_311 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_312 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_313 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_314 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_315 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_316 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_317 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_318 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_319 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_320 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_321 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_322 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_323 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_324 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_325 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_326 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_327 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_328 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_329 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_330 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_331 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_332 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_333 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_334 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_335 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_336 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_337 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_338 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_339 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_340 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_341 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_342 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_343 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_344 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_345 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_346 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_347 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_348 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_349 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_350 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_351 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_352 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_353 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_354 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_355 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_356 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_357 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_358 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_359 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_360 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_361 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_362 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_363 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_364 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_365 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_366 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_367 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_368 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_369 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_370 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_371 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_372 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_373 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_375 | 1.0 | 0.0 | 1.0 |
| OCMLDPMP_376 | 0.0 | 1.0 | 0.0 |
| OCMLDPMP_377 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCMLDPMP_2 | 33854 | 44728 | False | Siphoviridae | VOG0749, |
| OCMLDPMP_79 | 5020 | 14771 | True | Unknown | VOG8253, |
Phigaro v2.4.0 (Database: Jan. 2024 release)