Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CNOGBGGJ_34 | 72750 | 76433 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 103.46 | NC_008618.1 |
| CNOGBGGJ_11 | 16138 | 19464 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.64 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CNOGBGGJ_1 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_2 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_3 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_4 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_5 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_6 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_7 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_8 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_9 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_10 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_11 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_12 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_13 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_14 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_15 | 1.0 | 0.0 | 1.0 |
| CNOGBGGJ_16 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_17 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_18 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_19 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_20 | 1.0 | 0.0 | 1.0 |
| CNOGBGGJ_21 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_22 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_23 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_24 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_26 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_27 | 1.0 | 0.0 | 1.0 |
| CNOGBGGJ_28 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_29 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_30 | 1.0 | 0.0 | 1.0 |
| CNOGBGGJ_31 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_34 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_39 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_40 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_41 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_42 | 0.0 | 1.0 | 0.0 |
| CNOGBGGJ_43 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CNOGBGGJ_17 | 8616 | 13896 | False | Unknown | VOG7140, VOG0189, VOG0189 |
| CNOGBGGJ_42 | 45926 | 53612 | False | Siphoviridae | VOG5395, VOG4602, VOG0010, VOG3304, VOG0585, VOG11075 |
| CNOGBGGJ_43 | 10610 | 32409 | False | Myoviridae | VOG0384, VOG4548, VOG11016, VOG5689, VOG0382, VOG0052, VOG8190, VOG2090 |
Phigaro v2.4.0 (Database: Jan. 2024 release)