Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 1 | 8.06 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALEDNJF_279 | 48097 | 49233 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| JALEDNJF_279 | 47058 | 47921 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| JALEDNJF_347 | 10694 | 11509 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| JALEDNJF_360 | 2133 | 2867 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| JALEDNJF_29 | 1 | 1629 | tet(Q) | ARO:3000191 | tet(Q) | 97.42 | 82.65 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JALEDNJF_347 | 10694 | 11509 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| JALEDNJF_279 | 48097 | 49263 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| JALEDNJF_360 | 2133 | 2867 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| JALEDNJF_29 | 1 | 1630 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.42 | 84.63 | Z21523 |
| JALEDNJF_360 | 55 | 1361 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.40 | 89.21 | AF227520 |
| JALEDNJF_361 | 4089 | 5303 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JALEDNJF_279 | 47061 | 47921 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| JALEDNJF_316 | 6204 | 7109 | blaMUN-1 | MUN family extended-spectrum class A beta-lactamase MUN-1 | ALLELEX | 100.00 | 100.00 | WP_206340447.1 |
| JALEDNJF_347 | 10694 | 11506 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| JALEDNJF_279 | 48100 | 49263 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JALEDNJF_360 | 2133 | 2864 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| JALEDNJF_29 | 1 | 1629 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | PARTIAL_CONTIG_ENDX | 97.42 | 84.71 | WP_002560998.1 |
| JALEDNJF_361 | 4089 | 5312 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
| JALEDNJF_279 | 49435 | 50184 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | PARTIALX | 99.60 | 65.96 | WP_204376222.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JALEDNJF_113 | 76957 | 75377 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JALEDNJF_48 | 7 | 587 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JALEDNJF_1 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_2 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_3 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_4 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_5 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_6 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_7 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_8 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_9 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_10 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_11 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_12 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_13 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_14 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_15 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_16 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_17 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_18 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_19 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_20 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_21 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_22 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_23 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_24 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_25 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_26 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_27 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_28 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_29 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_30 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_31 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_32 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_33 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_34 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_35 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_36 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_37 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_38 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_39 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_40 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_41 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_42 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_43 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_44 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_45 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_46 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_47 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_57 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_68 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_79 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_90 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_101 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_112 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_113 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_124 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_135 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_146 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_157 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_168 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_179 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_190 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_201 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_212 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_223 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_224 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_235 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_246 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_257 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_268 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_279 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_290 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_301 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_312 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_315 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_316 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_317 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_318 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_319 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_320 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_321 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_322 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_323 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_324 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_325 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_326 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_327 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_328 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_329 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_330 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_331 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_332 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_333 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_334 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_335 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_336 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_337 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_338 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_339 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_340 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_341 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_342 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_343 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_344 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_345 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_346 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_347 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_348 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_349 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_350 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_351 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_352 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_353 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_354 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_355 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_356 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_357 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_358 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_359 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_360 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_361 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_362 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_363 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_364 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_366 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_367 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_368 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_369 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_370 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_371 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_372 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_373 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_374 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_375 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_376 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_377 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_378 | 0.0 | 1.0 | 0.0 |
| JALEDNJF_379 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_380 | 1.0 | 0.0 | 1.0 |
| JALEDNJF_381 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JALEDNJF_90 | 83293 | 93044 | True | Unknown | VOG8336, |
| JALEDNJF_338 | 70873 | 80758 | False | Siphoviridae | VOG5122, |
Phigaro v2.4.0 (Database: Jan. 2024 release)