Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 0 | 5.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMDHFPPB_112 | 396673 | 397638 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| CMDHFPPB_35 | 103039 | 103776 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| CMDHFPPB_246 | 13999 | 15972 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
| CMDHFPPB_201 | 9956 | 10846 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMDHFPPB_246 | 14047 | 15972 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| CMDHFPPB_112 | 396673 | 397638 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| CMDHFPPB_112 | 396673 | 397638 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| CMDHFPPB_112 | 396673 | 397638 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| CMDHFPPB_112 | 396673 | 397638 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| CMDHFPPB_35 | 103039 | 103776 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.73 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMDHFPPB_201 | 9959 | 10846 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| CMDHFPPB_246 | 14047 | 15969 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| CMDHFPPB_112 | 396676 | 397638 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| CMDHFPPB_35 | 103039 | 103773 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.18 | 100.00 | WP_002292226.1 |
| CMDHFPPB_418 | 259685 | 260635 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.60 | 98.75 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMDHFPPB_419 | 21 | 700 | repUS2 | 682 / 681 | 99.27 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMDHFPPB_1 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_2 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_13 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_24 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_35 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_46 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_57 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_68 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_79 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_90 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_101 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_112 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_113 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_124 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_135 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_146 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_157 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_168 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_179 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_190 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_201 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_212 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_223 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_224 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_235 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_246 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_257 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_268 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_279 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_290 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_301 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_312 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_323 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_334 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_335 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_346 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_368 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_379 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_390 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_401 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_412 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_416 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_417 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_418 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_419 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_420 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_421 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_422 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_423 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_424 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_425 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_426 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_427 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_428 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_429 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_430 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_431 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_432 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_433 | 1.0 | 0.0 | 1.0 |
| CMDHFPPB_440 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_451 | 0.0 | 1.0 | 0.0 |
| CMDHFPPB_462 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMDHFPPB_2 | 83108 | 94874 | False | Unknown | VOG4690, |
| CMDHFPPB_2 | 179742 | 192878 | False | Unknown | VOG3992, |
| CMDHFPPB_24 | 41530 | 49280 | False | Siphoviridae | VOG4544, |
| CMDHFPPB_35 | 77661 | 82283 | True | Siphoviridae | VOG0275, |
| CMDHFPPB_112 | 130598 | 134588 | False | Unknown | VOG4567, |
| CMDHFPPB_223 | 285312 | 296023 | False | Unknown | VOG5821, |
| CMDHFPPB_224 | 1614 | 12320 | False | Siphoviridae | VOG0749, |
Phigaro v2.4.0 (Database: Jan. 2024 release)