Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCAEAECH_72 | 212844 | 213809 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| HCAEAECH_59 | 119443 | 120648 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| HCAEAECH_58 | 33835 | 34569 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
| HCAEAECH_84 | 11665 | 13590 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCAEAECH_84 | 11665 | 13590 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| HCAEAECH_72 | 212844 | 213809 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| HCAEAECH_72 | 212844 | 213809 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| HCAEAECH_72 | 212844 | 213809 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| HCAEAECH_72 | 212844 | 213809 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| HCAEAECH_58 | 33835 | 34569 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
| HCAEAECH_58 | 31600 | 33063 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.47 | 100.00 | AF274302 |
| HCAEAECH_58 | 30260 | 31474 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCAEAECH_72 | 212844 | 213806 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| HCAEAECH_84 | 11665 | 13587 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| HCAEAECH_58 | 33835 | 34566 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
| HCAEAECH_59 | 119443 | 120645 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| HCAEAECH_59 | 120673 | 121182 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| HCAEAECH_58 | 31600 | 33060 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 96.92 | 100.00 | WP_000420313.1 |
| HCAEAECH_58 | 30260 | 31483 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCAEAECH_1 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_2 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_3 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_4 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_5 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_6 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_13 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_24 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_35 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_45 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_53 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_57 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_58 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_59 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_60 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_61 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_62 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_63 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_64 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_65 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_66 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_67 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_68 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_69 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_70 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_71 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_72 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_73 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_74 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_75 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_76 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_77 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_78 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_79 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_80 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_81 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_82 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_83 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_84 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_85 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_86 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_87 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_88 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_89 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_90 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_91 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_92 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_93 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_94 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_95 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_96 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_97 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_98 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_99 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_100 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_101 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_102 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_103 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_104 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_105 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_106 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_107 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_108 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_109 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_110 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_111 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_112 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_113 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_114 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_115 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_116 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_117 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_118 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_119 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_120 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_121 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_122 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_123 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_124 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_125 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_126 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_127 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_128 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_129 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_130 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_131 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_132 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_133 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_134 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_135 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_136 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_138 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_139 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_140 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_141 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_143 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_144 | 0.0 | 1.0 | 0.0 |
| HCAEAECH_145 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_146 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_147 | 1.0 | 0.0 | 1.0 |
| HCAEAECH_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)