Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHGKJAF_58 | 40886 | 41623 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| IIHGKJAF_160 | 1857 | 3782 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IIHGKJAF_58 | 40886 | 41623 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| IIHGKJAF_160 | 1857 | 3782 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IIHGKJAF_58 | 40889 | 41623 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| IIHGKJAF_160 | 1857 | 3779 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IIHGKJAF_120 | 41337 | 42917 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IIHGKJAF_27 | 413 | 993 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IIHGKJAF_1 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_2 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_3 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_4 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_5 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_6 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_7 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_9 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_10 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_11 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_12 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_13 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_14 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_15 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_16 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_18 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_19 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_20 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_21 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_22 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_23 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_24 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_25 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_26 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_32 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_42 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_50 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_58 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_66 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_73 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_80 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_83 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_84 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_89 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_93 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_99 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_104 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_107 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_109 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_114 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_115 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_116 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_117 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_118 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_119 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_120 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_121 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_122 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_123 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_124 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_125 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_126 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_127 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_128 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_129 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_130 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_131 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_132 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_133 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_134 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_135 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_136 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_137 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_138 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_139 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_140 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_141 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_142 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_143 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_144 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_145 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_146 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_147 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_148 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_149 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_150 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_151 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_152 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_153 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_154 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_155 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_156 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_157 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_158 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_159 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_160 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_161 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_162 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_163 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_164 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_165 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_166 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_167 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_168 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_169 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_170 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_171 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_172 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_173 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_174 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_175 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_176 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_178 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_179 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_180 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_182 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_183 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_184 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_185 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_186 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_187 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_188 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_189 | 0.0 | 1.0 | 0.0 |
| IIHGKJAF_190 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_192 | 1.0 | 0.0 | 1.0 |
| IIHGKJAF_193 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IIHGKJAF_12 | 112206 | 122924 | False | Siphoviridae | VOG0327, |
| IIHGKJAF_89 | 6269 | 10708 | False | Unknown | VOG2165, |
| IIHGKJAF_121 | 12142 | 15717 | True | Unknown | VOG0275, |
| IIHGKJAF_139 | 1908 | 14851 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)