Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOMCFJNK_57 | 111243 | 112208 | CfxA2 | ARO:3003002 | CfxA2 | 99.69 | 100.00 | AF118110.1 |
| OOMCFJNK_121 | 53706 | 54911 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OOMCFJNK_57 | 111243 | 112208 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| OOMCFJNK_57 | 111243 | 112208 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| OOMCFJNK_57 | 111243 | 112208 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| OOMCFJNK_57 | 111243 | 112208 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OOMCFJNK_121 | 53172 | 53681 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OOMCFJNK_57 | 111246 | 112208 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| OOMCFJNK_121 | 53709 | 54911 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OOMCFJNK_103 | 89167 | 90747 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OOMCFJNK_179 | 7 | 587 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OOMCFJNK_1 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_2 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_13 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_24 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_35 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_46 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_57 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_68 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_79 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_90 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_101 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_103 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_104 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_105 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_106 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_107 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_108 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_109 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_110 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_111 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_112 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_113 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_114 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_115 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_116 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_117 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_118 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_119 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_120 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_121 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_122 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_123 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_124 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_125 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_126 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_127 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_128 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_129 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_130 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_131 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_132 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_133 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_134 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_135 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_136 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_137 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_138 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_139 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_140 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_141 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_142 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_143 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_144 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_145 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_146 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_147 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_148 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_149 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_150 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_151 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_152 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_153 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_154 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_155 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_156 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_157 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_158 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_159 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_160 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_161 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_162 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_164 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_165 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_166 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_167 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_168 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_169 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_170 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_171 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_172 | 0.0 | 1.0 | 0.0 |
| OOMCFJNK_173 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_174 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_175 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_176 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_177 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_178 | 1.0 | 0.0 | 1.0 |
| OOMCFJNK_180 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OOMCFJNK_147 | 138530 | 154644 | False | Unknown | VOG0298, |
| OOMCFJNK_180 | 84557 | 88777 | False | Myoviridae | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)