Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGGIOPCJ_47 | 60803 | 61540 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
| OGGIOPCJ_179 | 1857 | 3782 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGGIOPCJ_47 | 60803 | 61540 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | U18931 |
| OGGIOPCJ_179 | 1857 | 3782 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGGIOPCJ_47 | 60803 | 61537 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_002292226.1 |
| OGGIOPCJ_179 | 1857 | 3779 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OGGIOPCJ_140 | 23694 | 22114 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OGGIOPCJ_28 | 413 | 993 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGGIOPCJ_1 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_2 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_3 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_4 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_6 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_7 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_9 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_10 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_11 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_12 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_13 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_15 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_16 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_17 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_18 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_19 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_20 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_21 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_22 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_23 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_24 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_25 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_26 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_27 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_33 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_41 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_47 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_56 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_65 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_73 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_81 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_91 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_92 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_99 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_104 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_110 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_114 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_120 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_125 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_131 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_136 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_137 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_138 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_139 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_140 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_141 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_142 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_143 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_144 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_145 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_146 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_147 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_148 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_149 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_150 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_151 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_152 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_153 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_154 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_155 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_156 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_157 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_158 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_159 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_160 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_161 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_162 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_163 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_164 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_165 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_166 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_167 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_168 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_169 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_170 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_171 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_172 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_173 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_174 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_175 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_176 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_177 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_178 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_179 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_180 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_181 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_182 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_183 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_184 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_185 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_186 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_187 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_188 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_189 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_190 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_191 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_192 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_193 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_194 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_195 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_196 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_198 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_199 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_200 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_201 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_203 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_204 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_205 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_206 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_207 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_208 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_209 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_210 | 0.0 | 1.0 | 0.0 |
| OGGIOPCJ_211 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_213 | 1.0 | 0.0 | 1.0 |
| OGGIOPCJ_214 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OGGIOPCJ_13 | 13490 | 23517 | False | Siphoviridae | VOG4552, |
| OGGIOPCJ_81 | 72278 | 85221 | False | Myoviridae | VOG5924, |
| OGGIOPCJ_92 | 6269 | 10708 | False | Unknown | VOG2165, |
| OGGIOPCJ_141 | 12142 | 15717 | True | Unknown | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)