Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KEFJNCIP_94 | 60094 | 62019 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| KEFJNCIP_106 | 37399 | 38289 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KEFJNCIP_94 | 60094 | 62019 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KEFJNCIP_94 | 60094 | 62016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| KEFJNCIP_106 | 37399 | 38286 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KEFJNCIP_1 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_2 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_3 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_4 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_5 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_6 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_7 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_8 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_9 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_10 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_11 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_13 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_24 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_35 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_46 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_57 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_68 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_79 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_90 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_92 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_93 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_94 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_95 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_96 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_97 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_98 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_99 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_100 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_101 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_102 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_103 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_104 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_105 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_106 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_107 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_108 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_109 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_110 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_111 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_112 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_113 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_114 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_115 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_116 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_117 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_118 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_119 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_120 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_121 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_122 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_123 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_124 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_125 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_126 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_127 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_128 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_129 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_130 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_131 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_132 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_133 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_134 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_135 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_136 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_137 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_138 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_139 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_140 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_141 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_142 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_143 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_144 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_145 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_146 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_147 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_148 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_149 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_150 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_151 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_152 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_153 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_154 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_155 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_157 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_158 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_159 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_160 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_161 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_162 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_163 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_164 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_165 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_166 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_167 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_168 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_169 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_170 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_171 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_172 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_173 | 0.0 | 1.0 | 0.0 |
| KEFJNCIP_174 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_175 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_176 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_177 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_178 | 1.0 | 0.0 | 1.0 |
| KEFJNCIP_179 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KEFJNCIP_2 | 24924 | 41038 | False | Unknown | VOG0298, |
| KEFJNCIP_24 | 10235 | 17806 | False | Siphoviridae | VOG4544, |
| KEFJNCIP_102 | 42177 | 51374 | False | Unknown | VOG3992, |
| KEFJNCIP_110 | 17008 | 28676 | False | Siphoviridae | VOG7268, |
Phigaro v2.4.0 (Database: Jan. 2024 release)