Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKAOBDNM_94 | 60094 | 62019 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| PKAOBDNM_106 | 10050 | 10940 | CblA-1 | ARO:3002999 | CblA-1 | 96.28 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKAOBDNM_94 | 60094 | 62019 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKAOBDNM_94 | 60094 | 62016 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| PKAOBDNM_106 | 10053 | 10940 | cblA | CblA family class A beta-lactamase | BLASTX | 96.28 | 100.00 | WP_005827792.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKAOBDNM_1 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_2 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_3 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_4 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_5 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_6 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_7 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_8 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_9 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_10 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_11 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_13 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_24 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_35 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_46 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_57 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_68 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_79 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_89 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_90 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_91 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_92 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_93 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_94 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_95 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_96 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_97 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_98 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_99 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_100 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_101 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_102 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_103 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_104 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_105 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_106 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_107 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_108 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_109 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_110 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_111 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_112 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_113 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_114 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_115 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_116 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_117 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_118 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_119 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_120 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_121 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_122 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_123 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_124 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_125 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_126 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_127 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_128 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_129 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_130 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_131 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_132 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_133 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_134 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_135 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_136 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_137 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_138 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_139 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_140 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_141 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_142 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_143 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_144 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_145 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_146 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_147 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_148 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_149 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_150 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_151 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_153 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_154 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_155 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_156 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_157 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_158 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_159 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_160 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_161 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_162 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_163 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_164 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_165 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_166 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_167 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_168 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_169 | 0.0 | 1.0 | 0.0 |
| PKAOBDNM_170 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_171 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_172 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_173 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_174 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_175 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_176 | 1.0 | 0.0 | 1.0 |
| PKAOBDNM_178 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PKAOBDNM_13 | 111473 | 119044 | False | Siphoviridae | VOG0292, |
| PKAOBDNM_104 | 2532 | 11729 | False | Unknown | VOG4573, |
| PKAOBDNM_107 | 17008 | 28676 | False | Siphoviridae | VOG7268, |
| PKAOBDNM_168 | 24924 | 41038 | False | Unknown | VOG0298, |
Phigaro v2.4.0 (Database: Jan. 2024 release)