Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NAMFFOAA_1 | 37239 | 37940 | WalR | 3.23e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NAMFFOAA_7 | 1 | 828 | rep28 | 828 / 930 | 98.19 | CP003162 |
| NAMFFOAA_8 | 186 | 721 | repUS54 | 539 / 690 | 84.23 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NAMFFOAA_1 | 0.0 | 1.0 | 0.0 |
| NAMFFOAA_2 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_3 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_4 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_5 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_6 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_7 | 1.0 | 0.0 | 1.0 |
| NAMFFOAA_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NAMFFOAA_1 | 796359 | 810991 | False | Siphoviridae | VOG7796, VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG0198, VOG8908, VOG0480 |
| NAMFFOAA_1 | 1495885 | 1525722 | False | Myoviridae | VOG5775, VOG0703, VOG5087, VOG0861, VOG7896, VOG4845, VOG4691, VOG2349, VOG0573, VOG1348, VOG1433, VOG4865, VOG4699, VOG1883, VOG1353, VOG5795, VOG1329, VOG7118, VOG5088, VOG4564, VOG0720, VOG8453, VOG7407, VOG0611, VOG10144, VOG0045 |
| NAMFFOAA_1 | 1527469 | 1534386 | False | Unknown | VOG0198, VOG0044, VOG0822, VOG6005, VOG4693, VOG7236, VOG4566, VOG0186, VOG1309 |
| NAMFFOAA_2 | 5436 | 42312 | False | Myoviridae | VOG7236, VOG4693, VOG6005, VOG0044, VOG3643, VOG4010, VOG0198, VOG3691, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6540, VOG7892, VOG3298, VOG3298, VOG9601, VOG0703 |
Phigaro v2.4.0 (Database: Jan. 2024 release)