Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCHFCMKJ_43 | 2355 | 3215 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCHFCMKJ_43 | 2355 | 3215 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCHFCMKJ_43 | 2355 | 3212 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCHFCMKJ_93 | 112233 | 111529 | WalR | 3.29e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HCHFCMKJ_99 | 154223 | 154420 | CspR | 1.12e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HCHFCMKJ_43 | 3630 | 3760 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCHFCMKJ_13 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_41 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_43 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_44 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_45 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_54 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_66 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_78 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_80 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_81 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_82 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_83 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_85 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_86 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_88 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_90 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_93 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_98 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_99 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_100 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_101 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_102 | 0.0 | 1.0 | 0.0 |
| HCHFCMKJ_103 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_104 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_105 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_107 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_108 | 1.0 | 0.0 | 1.0 |
| HCHFCMKJ_109 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCHFCMKJ_82 | 1175 | 32098 | False | Siphoviridae | VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG4570, VOG10481, VOG0143, VOG0198, VOG0044, VOG1298, VOG3643, VOG0152, VOG9759, VOG4693, VOG7735, VOG0025, VOG4799, VOG3642, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552 |
| HCHFCMKJ_99 | 75996 | 84936 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG1886, VOG5051, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)