Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EPEFKAOO_56 | 50408 | 50211 | CspA | 1.74e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| EPEFKAOO_56 | 50408 | 50214 | CspR | 7.56e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| EPEFKAOO_31 | 3749 | 4292 | rep38 | 547 / 903 | 89.03 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPEFKAOO_1 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_2 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_3 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_4 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_5 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_6 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_7 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_8 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_9 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_10 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_11 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_12 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_13 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_14 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_15 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_16 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_17 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_18 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_19 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_20 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_21 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_22 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_23 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_24 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_25 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_26 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_27 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_28 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_29 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_30 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_31 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_32 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_33 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_34 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_35 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_36 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_37 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_38 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_39 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_40 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_41 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_42 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_43 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_44 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_45 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_46 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_48 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_49 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_50 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_51 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_52 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_53 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_54 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_55 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_56 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_57 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_58 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_59 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_60 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_61 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_62 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_63 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_64 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_65 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_66 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_67 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_68 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_69 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_70 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_71 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_72 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_73 | 1.0 | 0.0 | 1.0 |
| EPEFKAOO_78 | 0.0 | 1.0 | 0.0 |
| EPEFKAOO_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPEFKAOO_12 | 69326 | 91247 | False | Myoviridae / Siphoviridae | VOG10038, VOG1292, VOG10457, VOG1176, VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083 |
Phigaro v2.4.0 (Database: Jan. 2024 release)