Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PCKOPFGG_156 | 7374 | 7177 | CspR | 3.12e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| PCKOPFGG_156 | 7374 | 7177 | CspA | 5.81e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PCKOPFGG_7 | 8660 | 9202 | rep38 | 543 / 903 | 86.00 | CP005943 |
| PCKOPFGG_144 | 35366 | 36301 | rep28 | 944 / 936 | 81.57 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCKOPFGG_1 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_2 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_3 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_4 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_5 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_6 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_7 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_8 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_9 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_10 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_11 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_12 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_13 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_14 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_15 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_16 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_17 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_18 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_19 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_20 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_21 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_22 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_23 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_25 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_26 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_27 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_28 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_29 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_30 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_31 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_32 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_33 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_34 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_35 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_36 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_37 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_38 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_39 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_40 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_41 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_42 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_43 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_44 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_45 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_46 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_48 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_49 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_50 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_51 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_52 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_53 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_54 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_55 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_56 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_57 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_58 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_59 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_60 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_61 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_62 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_63 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_64 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_66 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_67 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_69 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_70 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_71 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_72 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_73 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_74 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_76 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_77 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_78 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_80 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_81 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_82 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_84 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_85 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_86 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_87 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_89 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_90 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_91 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_92 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_93 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_94 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_95 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_97 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_98 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_99 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_100 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_105 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_111 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_122 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_127 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_132 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_138 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_144 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_149 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_151 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_152 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_153 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_154 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_155 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_156 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_157 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_158 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_159 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_160 | 1.0 | 0.0 | 1.0 |
| PCKOPFGG_161 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_162 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_163 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_164 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_165 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_166 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_167 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_168 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_169 | 0.0 | 1.0 | 0.0 |
| PCKOPFGG_170 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCKOPFGG_1 | 47990 | 76216 | False | Siphoviridae | VOG8917, VOG9880, VOG4856, VOG9997, VOG10972, VOG3462, VOG0801, VOG8263, VOG6698, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG3349 |
| PCKOPFGG_1 | 82331 | 93142 | False | Myoviridae / Siphoviridae | VOG1298, VOG0638, VOG0425, VOG4813, VOG4693, VOG4237, VOG8685, VOG0189, VOG8647, VOG0514, VOG0226, VOG0186, VOG1309 |
| PCKOPFGG_32 | 22913 | 42692 | False | Myoviridae / Siphoviridae | VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG1176, VOG10457 |
Phigaro v2.4.0 (Database: Jan. 2024 release)