Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEMHGBMG_2 | 23663 | 25582 | tet(M) | ARO:3000186 | tet(M) | 99.22 | 100.00 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LEMHGBMG_2 | 23663 | 25582 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LEMHGBMG_2 | 23663 | 25579 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.84 | 100.00 | WP_000691727.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEMHGBMG_1 | 37771 | 38475 | WalR | 1.69e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LEMHGBMG_4 | 10813 | 11748 | rep28 | 936 / 936 | 99.15 | CP005948 |
| LEMHGBMG_6 | 28859 | 29765 | rep38 | 909 / 903 | 98.57 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEMHGBMG_1 | 0.0 | 1.0 | 0.0 |
| LEMHGBMG_2 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_3 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_4 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_5 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_6 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_7 | 1.0 | 0.0 | 1.0 |
| LEMHGBMG_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEMHGBMG_1 | 759081 | 762525 | False | Siphoviridae | VOG9312, VOG4602, VOG6495, VOG6495, VOG8916 |
| LEMHGBMG_1 | 1301091 | 1330462 | False | Siphoviridae | VOG4693, VOG0198, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG5852, VOG0660, VOG5631, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998 |
Phigaro v2.4.0 (Database: Jan. 2024 release)