Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 4 | 4.58 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NINNBMHO_1 | 564058 | 565107 | clbA | ARO:3002814 | clbA | 99.14 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NINNBMHO_1 | 564058 | 565093 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NINNBMHO_1 | 564058 | 565104 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.14 | 100.00 | WP_012116915.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NINNBMHO_1 | 3695781 | 3696962 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| NINNBMHO_1 | 3695317 | 3695766 | capC | 1.55e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NINNBMHO_1 | 133402 | 134538 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| NINNBMHO_1 | 18616 | 19485 | pdxS | 3.50e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| NINNBMHO_1 | 1714840 | 1715616 | CodY | 4.96e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NINNBMHO_1 | 3324083 | 3323211 | lipA (SAUSA300_0829) | 1.35e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NINNBMHO_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NINNBMHO_1 | 638069 | 648560 | False | Siphoviridae | VOG0275, VOG4602, VOG1561, VOG9667, VOG11075, VOG0650, VOG4552, VOG8233, VOG0186, VOG9093, VOG0189, VOG0044 |
| NINNBMHO_1 | 655620 | 677458 | False | Siphoviridae | VOG2703, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG5361, VOG1329, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG0725, VOG1323, VOG4545, VOG4605, VOG4599, VOG5535, VOG0753 |
| NINNBMHO_1 | 1309549 | 1334982 | False | Myoviridae | VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG5660, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705 |
| NINNBMHO_1 | 1927535 | 1942344 | False | Siphoviridae | VOG4910, VOG9312, VOG0275, VOG7930, VOG8610, VOG5008, VOG3390, VOG7718 |
Phigaro v2.4.0 (Database: Jan. 2024 release)