Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MHNAGHCH_34 | 150918 | 151622 | WalR | 1.09e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MHNAGHCH_23 | 156959 | 156765 | CspR | 8.97e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MHNAGHCH_23 | 156959 | 156762 | CspA | 1.38e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MHNAGHCH_41 | 1467 | 2369 | rep38 | 903 / 903 | 99.56 | CP005943 |
| MHNAGHCH_36 | 671 | 1738 | repUS73 | 1068 / 1101 | 96.54 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MHNAGHCH_1 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_2 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_3 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_4 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_5 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_6 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_7 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_8 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_9 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_10 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_11 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_12 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_13 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_14 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_15 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_16 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_17 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_18 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_19 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_20 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_21 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_22 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_23 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_24 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_25 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_26 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_27 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_28 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_29 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_30 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_31 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_32 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_33 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_34 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_35 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_36 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_37 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_38 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_39 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_40 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_41 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_42 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_43 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_44 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_45 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_47 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_48 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_49 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_50 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_51 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_52 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_53 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_55 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_56 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_57 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_58 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_59 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_60 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_61 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_62 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_63 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_64 | 1.0 | 0.0 | 1.0 |
| MHNAGHCH_67 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_78 | 0.0 | 1.0 | 0.0 |
| MHNAGHCH_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MHNAGHCH_15 | 11874 | 16714 | False | Siphoviridae | VOG4566, VOG9667, VOG0181, VOG6495, VOG11003, VOG11077 |
| MHNAGHCH_18 | 3861 | 19178 | False | Siphoviridae | VOG8647, VOG0189, VOG0586, VOG1298, VOG0044, VOG0198, VOG4841, VOG10904, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209 |
| MHNAGHCH_20 | 2572 | 14503 | False | Siphoviridae | VOG4571, VOG4841, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG1322 |
| MHNAGHCH_34 | 141638 | 148471 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)