Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MLHAJGEM_5 | 30156 | 30860 | WalR | 4.25e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| MLHAJGEM_34 | 34960 | 35154 | CspR | 8.47e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MLHAJGEM_34 | 34960 | 35157 | CspA | 1.30e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MLHAJGEM_32 | 7566 | 8666 | repUS73 | 1101 / 1101 | 95.46 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MLHAJGEM_1 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_2 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_3 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_4 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_5 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_6 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_7 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_8 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_9 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_10 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_11 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_12 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_13 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_14 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_15 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_16 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_17 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_18 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_19 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_20 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_21 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_22 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_23 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_24 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_25 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_26 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_27 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_28 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_29 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_30 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_31 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_32 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_33 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_34 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_35 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_36 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_37 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_38 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_39 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_40 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_41 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_42 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_43 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_44 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_45 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_46 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_47 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_48 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_49 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_50 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_51 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_53 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_54 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_55 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_56 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_57 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_58 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_59 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_61 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_62 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_63 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_64 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_65 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_66 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_67 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_68 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_69 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_70 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_71 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_72 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_73 | 1.0 | 0.0 | 1.0 |
| MLHAJGEM_78 | 0.0 | 1.0 | 0.0 |
| MLHAJGEM_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MLHAJGEM_5 | 20876 | 27709 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556 |
| MLHAJGEM_12 | 1255 | 15383 | False | Siphoviridae | VOG0207, VOG4586, VOG5852, VOG0660, VOG6307, VOG4605, VOG4599, VOG10957 |
| MLHAJGEM_16 | 11731 | 16571 | False | Siphoviridae | VOG4566, VOG9667, VOG0181, VOG6495, VOG11003, VOG11077 |
| MLHAJGEM_20 | 5422 | 37285 | False | Siphoviridae | VOG1563, VOG8222, VOG8925, VOG0321, VOG10904, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0586, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG1637 |
| MLHAJGEM_45 | 144546 | 159338 | False | Siphoviridae | VOG5871, VOG4599, VOG4605, VOG6163, VOG0209, VOG1322 |
| MLHAJGEM_67 | 30055 | 54159 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)