Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJFALEOF_34 | 150918 | 151622 | WalR | 1.09e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| JJFALEOF_23 | 156959 | 156765 | CspR | 8.97e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| JJFALEOF_23 | 156959 | 156762 | CspA | 1.38e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JJFALEOF_41 | 1608 | 2510 | rep38 | 903 / 903 | 99.56 | CP005943 |
| JJFALEOF_17 | 16467 | 17534 | repUS73 | 1068 / 1101 | 96.54 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJFALEOF_1 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_2 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_3 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_4 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_5 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_6 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_7 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_8 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_9 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_10 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_11 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_12 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_13 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_14 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_15 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_16 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_17 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_18 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_19 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_20 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_21 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_22 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_23 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_24 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_25 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_26 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_27 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_28 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_29 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_30 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_31 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_32 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_33 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_34 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_35 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_36 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_37 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_38 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_39 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_40 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_41 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_42 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_43 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_44 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_45 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_46 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_47 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_49 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_50 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_51 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_52 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_53 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_54 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_56 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_57 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_58 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_59 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_60 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_61 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_62 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_63 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_64 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_65 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_66 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_67 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_68 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_69 | 1.0 | 0.0 | 1.0 |
| JJFALEOF_78 | 0.0 | 1.0 | 0.0 |
| JJFALEOF_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJFALEOF_15 | 11874 | 16714 | False | Siphoviridae | VOG4566, VOG9667, VOG0181, VOG6495, VOG11003, VOG11077 |
| JJFALEOF_20 | 3861 | 19178 | False | Siphoviridae | VOG8647, VOG0189, VOG0586, VOG1298, VOG0044, VOG0198, VOG4841, VOG10904, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209 |
| JJFALEOF_22 | 2572 | 14503 | False | Siphoviridae | VOG4571, VOG4841, VOG4841, VOG4581, VOG1886, VOG7540, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG1322 |
| JJFALEOF_34 | 141638 | 148471 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)