Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IGBKOBNA_1 | 1024165 | 1024869 | WalR | 7.16e-111 | transcriptional regulatory protein | 82.98 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IGBKOBNA_2 | 16816 | 17877 | repUS74 | 1063 / 1062 | 93.41 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGBKOBNA_1 | 0.0 | 1.0 | 0.0 |
| IGBKOBNA_2 | 1.0 | 0.0 | 1.0 |
| IGBKOBNA_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IGBKOBNA_1 | 36399 | 46359 | False | Siphoviridae | VOG0536, VOG9860, VOG7018, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG3622, VOG6495 |
| IGBKOBNA_1 | 64062 | 102807 | False | Siphoviridae | VOG0249, VOG4918, VOG0703, VOG7017, VOG0861, VOG6455, VOG4599, VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4549, VOG10904, VOG4570, VOG6579, VOG0198, VOG1563, VOG0044, VOG3643, VOG0152, VOG4643, VOG0275, VOG0195, VOG4693, VOG6623, VOG9860, VOG0189, VOG4566, VOG0226, VOG0322, VOG9667, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG5353, VOG8520, VOG0862 |
| IGBKOBNA_1 | 1729671 | 1747945 | True | Unknown | VOG3624, VOG0221, VOG8916, VOG8916, VOG4829, VOG8916, VOG4813, VOG5532, VOG3624, VOG5088 |
| IGBKOBNA_1 | 2018791 | 2058437 | False | Siphoviridae | VOG3304, VOG0862, VOG8520, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189, VOG7018, VOG9860, VOG0536, VOG0195, VOG0275, VOG4643, VOG0152, VOG2338, VOG0198, VOG4570, VOG10904, VOG4549, VOG4841, VOG4581, VOG1886, VOG5051, VOG4556, VOG4573, VOG4553, VOG9975, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG5088, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
| IGBKOBNA_1 | 2296004 | 2333705 | False | Siphoviridae | VOG6914, VOG5539, VOG0862, VOG8520, VOG5353, VOG4552, VOG0181, VOG10867, VOG4967, VOG3642, VOG0685, VOG0283, VOG0514, VOG0226, VOG4799, VOG0025, VOG7735, VOG7018, VOG0536, VOG4571, VOG0152, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG10904, VOG4549, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG0703, VOG4918 |
| IGBKOBNA_1 | 2794362 | 2832409 | False | Siphoviridae | VOG4605, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG4570, VOG3477, VOG0198, VOG2338, VOG0044, VOG3643, VOG0673, VOG2820, VOG4643, VOG0275, VOG0195, VOG0536, VOG9860, VOG0189, VOG4566, VOG0186, VOG1309, VOG8241 |
| IGBKOBNA_1 | 3094977 | 3121240 | True | Siphoviridae | VOG0536, VOG9860, VOG7018, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG8520, VOG0862, VOG3304, VOG5944, VOG0275, VOG8916, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG5088, VOG4599, VOG4605, VOG6163, VOG0660 |
Phigaro v2.4.0 (Database: Jan. 2024 release)