Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DPMJJOCC_4 | 27809 | 27105 | WalR | 5.49e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| DPMJJOCC_29 | 1862 | 1668 | CspR | 3.86e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DPMJJOCC_29 | 1862 | 1665 | CspA | 5.92e-31 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DPMJJOCC_37 | 1145 | 2069 | repUS64 | 930 / 954 | 85.48 | JN601038 |
| DPMJJOCC_27 | 543 | 1478 | rep28 | 937 / 936 | 81.22 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DPMJJOCC_1 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_2 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_3 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_4 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_5 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_6 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_7 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_8 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_9 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_10 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_11 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_12 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_13 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_14 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_15 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_16 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_17 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_18 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_19 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_20 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_21 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_22 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_23 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_24 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_25 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_26 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_27 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_28 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_29 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_30 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_32 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_33 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_34 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_35 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_36 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_37 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_38 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_39 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_40 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_41 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_42 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_43 | 1.0 | 0.0 | 1.0 |
| DPMJJOCC_45 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_51 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_52 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_53 | 0.0 | 1.0 | 0.0 |
| DPMJJOCC_54 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DPMJJOCC_13 | 3619 | 15247 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| DPMJJOCC_54 | 94454 | 120785 | False | Siphoviridae | VOG8294, VOG0136, VOG9657, VOG9531, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG0692, VOG0691, VOG4544, VOG0796, VOG5616, VOG3015, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)