Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 1 | 5.20 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEFBKFAD_57 | 110848 | 111987 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| IEFBKFAD_57 | 109513 | 110649 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| IEFBKFAD_57 | 108474 | 109337 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| IEFBKFAD_8 | 2081 | 2815 | ErmG | ARO:3000522 | ErmG | 99.18 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEFBKFAD_57 | 109513 | 110679 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| IEFBKFAD_8 | 2081 | 2815 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.32 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEFBKFAD_57 | 108477 | 109337 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| IEFBKFAD_83 | 7389 | 8294 | blaMUN-5 | MUN family extended-spectrum class A beta-lactamase MUN-5 | ALLELEX | 100.00 | 100.00 | WP_254888401.1 |
| IEFBKFAD_57 | 109516 | 110679 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| IEFBKFAD_57 | 110851 | 111987 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| IEFBKFAD_8 | 2084 | 2815 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.59 | 100.00 | WP_063844791.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEFBKFAD_135 | 5809 | 6746 | virulence_ecoli | cea | Colicin E1 | 100.0 | 98.95 | LT985284 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEFBKFAD_200 | 169168 | 170748 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IEFBKFAD_135 | 4890 | 5020 | ColRNAI | 131 / 130 | 88.55 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEFBKFAD_1 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_2 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_3 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_4 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_5 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_6 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_7 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_8 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_9 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_10 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_11 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_12 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_13 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_14 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_15 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_16 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_17 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_18 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_19 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_20 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_21 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_22 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_23 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_24 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_25 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_26 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_27 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_28 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_29 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_30 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_31 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_32 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_33 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_34 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_35 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_36 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_37 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_38 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_39 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_40 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_41 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_42 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_43 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_44 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_45 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_46 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_47 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_48 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_49 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_51 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_52 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_53 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_54 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_55 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_56 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_57 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_58 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_59 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_60 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_61 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_62 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_63 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_64 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_65 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_66 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_67 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_68 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_69 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_70 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_71 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_72 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_73 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_74 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_75 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_76 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_77 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_78 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_79 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_80 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_81 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_82 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_83 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_84 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_85 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_86 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_87 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_88 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_89 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_90 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_91 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_92 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_93 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_94 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_95 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_96 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_97 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_98 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_99 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_100 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_101 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_102 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_103 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_104 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_105 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_106 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_107 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_108 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_109 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_110 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_111 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_112 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_113 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_114 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_115 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_116 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_117 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_118 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_119 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_120 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_121 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_122 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_123 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_124 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_125 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_126 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_127 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_128 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_129 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_130 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_131 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_132 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_133 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_134 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_135 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_136 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_137 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_138 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_139 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_140 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_141 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_142 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_143 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_144 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_145 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_146 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_147 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_148 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_149 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_150 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_151 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_152 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_153 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_154 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_155 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_156 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_157 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_158 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_159 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_160 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_161 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_162 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_163 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_164 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_165 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_166 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_167 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_168 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_169 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_170 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_171 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_172 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_173 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_174 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_175 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_176 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_177 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_178 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_179 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_180 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_181 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_182 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_183 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_184 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_185 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_186 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_187 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_188 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_189 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_190 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_191 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_192 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_193 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_194 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_195 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_196 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_197 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_198 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_199 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_200 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_201 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_202 | 1.0 | 0.0 | 1.0 |
| IEFBKFAD_203 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_204 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_205 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_206 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_207 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_208 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_209 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_210 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_211 | 0.0 | 1.0 | 0.0 |
| IEFBKFAD_212 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)