Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JACICNEM_46 | 110104 | 111309 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JACICNEM_46 | 88153 | 89055 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JACICNEM_46 | 88153 | 89055 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JACICNEM_46 | 88156 | 89055 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| JACICNEM_46 | 110104 | 111306 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| JACICNEM_46 | 111334 | 111843 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JACICNEM_1 | 0.0 | 1.0 | 0.0 |
| JACICNEM_2 | 0.0 | 1.0 | 0.0 |
| JACICNEM_3 | 0.0 | 1.0 | 0.0 |
| JACICNEM_4 | 0.0 | 1.0 | 0.0 |
| JACICNEM_5 | 0.0 | 1.0 | 0.0 |
| JACICNEM_6 | 0.0 | 1.0 | 0.0 |
| JACICNEM_7 | 0.0 | 1.0 | 0.0 |
| JACICNEM_8 | 0.0 | 1.0 | 0.0 |
| JACICNEM_9 | 1.0 | 0.0 | 1.0 |
| JACICNEM_10 | 1.0 | 0.0 | 1.0 |
| JACICNEM_11 | 0.0 | 1.0 | 0.0 |
| JACICNEM_12 | 0.0 | 1.0 | 0.0 |
| JACICNEM_13 | 0.0 | 1.0 | 0.0 |
| JACICNEM_14 | 1.0 | 0.0 | 1.0 |
| JACICNEM_15 | 0.0 | 1.0 | 0.0 |
| JACICNEM_16 | 0.0 | 1.0 | 0.0 |
| JACICNEM_17 | 0.0 | 1.0 | 0.0 |
| JACICNEM_18 | 0.0 | 1.0 | 0.0 |
| JACICNEM_19 | 0.0 | 1.0 | 0.0 |
| JACICNEM_20 | 0.0 | 1.0 | 0.0 |
| JACICNEM_21 | 0.0 | 1.0 | 0.0 |
| JACICNEM_22 | 0.0 | 1.0 | 0.0 |
| JACICNEM_23 | 0.0 | 1.0 | 0.0 |
| JACICNEM_24 | 1.0 | 0.0 | 1.0 |
| JACICNEM_25 | 0.0 | 1.0 | 0.0 |
| JACICNEM_26 | 1.0 | 0.0 | 1.0 |
| JACICNEM_27 | 1.0 | 0.0 | 1.0 |
| JACICNEM_28 | 0.0 | 1.0 | 0.0 |
| JACICNEM_29 | 1.0 | 0.0 | 1.0 |
| JACICNEM_30 | 0.0 | 1.0 | 0.0 |
| JACICNEM_31 | 0.0 | 1.0 | 0.0 |
| JACICNEM_32 | 0.0 | 1.0 | 0.0 |
| JACICNEM_33 | 1.0 | 0.0 | 1.0 |
| JACICNEM_34 | 0.0 | 1.0 | 0.0 |
| JACICNEM_35 | 1.0 | 0.0 | 1.0 |
| JACICNEM_36 | 0.0 | 1.0 | 0.0 |
| JACICNEM_37 | 0.0 | 1.0 | 0.0 |
| JACICNEM_38 | 0.0 | 1.0 | 0.0 |
| JACICNEM_39 | 0.0 | 1.0 | 0.0 |
| JACICNEM_40 | 1.0 | 0.0 | 1.0 |
| JACICNEM_41 | 1.0 | 0.0 | 1.0 |
| JACICNEM_42 | 0.0 | 1.0 | 0.0 |
| JACICNEM_43 | 0.0 | 1.0 | 0.0 |
| JACICNEM_44 | 0.0 | 1.0 | 0.0 |
| JACICNEM_45 | 1.0 | 0.0 | 1.0 |
| JACICNEM_46 | 0.0 | 1.0 | 0.0 |
| JACICNEM_47 | 0.0 | 1.0 | 0.0 |
| JACICNEM_48 | 0.0 | 1.0 | 0.0 |
| JACICNEM_49 | 0.0 | 1.0 | 0.0 |
| JACICNEM_50 | 0.0 | 1.0 | 0.0 |
| JACICNEM_51 | 1.0 | 0.0 | 1.0 |
| JACICNEM_52 | 0.0 | 1.0 | 0.0 |
| JACICNEM_53 | 0.0 | 1.0 | 0.0 |
| JACICNEM_54 | 0.0 | 1.0 | 0.0 |
| JACICNEM_55 | 0.0 | 1.0 | 0.0 |
| JACICNEM_56 | 0.0 | 1.0 | 0.0 |
| JACICNEM_57 | 0.0 | 1.0 | 0.0 |
| JACICNEM_58 | 1.0 | 0.0 | 1.0 |
| JACICNEM_59 | 0.0 | 1.0 | 0.0 |
| JACICNEM_60 | 0.0 | 1.0 | 0.0 |
| JACICNEM_61 | 0.0 | 1.0 | 0.0 |
| JACICNEM_62 | 1.0 | 0.0 | 1.0 |
| JACICNEM_63 | 1.0 | 0.0 | 1.0 |
| JACICNEM_64 | 1.0 | 0.0 | 1.0 |
| JACICNEM_65 | 1.0 | 0.0 | 1.0 |
| JACICNEM_66 | 0.0 | 1.0 | 0.0 |
| JACICNEM_67 | 0.0 | 1.0 | 0.0 |
| JACICNEM_68 | 0.0 | 1.0 | 0.0 |
| JACICNEM_69 | 0.0 | 1.0 | 0.0 |
| JACICNEM_70 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JACICNEM_8 | 59108 | 70575 | False | Siphoviridae | VOG8171, |
| JACICNEM_21 | 84012 | 92197 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)