Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKKIBBAH_64 | 44580 | 46505 | tet(Q) | ARO:3000191 | tet(Q) | 98.75 | 97.56 | Z21523.1 |
| CKKIBBAH_52 | 20600 | 21502 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKKIBBAH_52 | 20600 | 21502 | cepA-49 | Unknown Beta-lactam | 99.78 | 100.00 | U05886 |
| CKKIBBAH_64 | 44580 | 46505 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.01 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKKIBBAH_52 | 20600 | 21499 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| CKKIBBAH_64 | 44583 | 46505 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKKIBBAH_1 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_2 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_3 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_4 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_5 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_6 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_7 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_8 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_9 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_10 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_11 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_12 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_13 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_14 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_15 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_16 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_17 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_18 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_19 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_20 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_21 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_22 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_23 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_24 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_25 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_26 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_27 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_28 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_29 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_30 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_31 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_32 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_33 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_34 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_35 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_36 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_37 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_38 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_39 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_40 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_41 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_42 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_43 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_44 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_45 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_46 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_47 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_48 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_49 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_50 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_51 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_52 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_53 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_54 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_55 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_56 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_57 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_58 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_59 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_60 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_61 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_62 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_63 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_64 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_65 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_66 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_67 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_68 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_69 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_70 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_71 | 1.0 | 0.0 | 1.0 |
| CKKIBBAH_72 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_73 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_74 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_75 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_76 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_77 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_78 | 0.0 | 1.0 | 0.0 |
| CKKIBBAH_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKKIBBAH_27 | 6810 | 14093 | False | Siphoviridae | VOG4589, |
| CKKIBBAH_58 | 121108 | 134179 | False | Siphoviridae | VOG8171, |
Phigaro v2.4.0 (Database: Jan. 2024 release)