Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHJHHAFO_60 | 7248 | 8213 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| LHJHHAFO_155 | 4444 | 5610 | tet(X) | ARO:3000205 | tet(X) | 99.48 | 100.00 | M37699.1 |
| LHJHHAFO_71 | 319 | 2244 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| LHJHHAFO_164 | 235 | 1059 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LHJHHAFO_164 | 235 | 1059 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| LHJHHAFO_60 | 7248 | 8213 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| LHJHHAFO_60 | 7248 | 8213 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| LHJHHAFO_60 | 7248 | 8213 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| LHJHHAFO_60 | 7248 | 8213 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| LHJHHAFO_155 | 4444 | 5610 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| LHJHHAFO_71 | 319 | 2244 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LHJHHAFO_164 | 238 | 1059 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| LHJHHAFO_60 | 7248 | 8210 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| LHJHHAFO_155 | 4444 | 5607 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| LHJHHAFO_71 | 319 | 2241 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LHJHHAFO_165 | 27642 | 26062 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHJHHAFO_1 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_2 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_3 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_4 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_5 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_6 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_7 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_8 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_9 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_10 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_11 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_12 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_13 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_14 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_15 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_16 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_17 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_18 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_19 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_20 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_21 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_22 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_23 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_24 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_25 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_26 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_27 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_28 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_29 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_30 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_31 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_32 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_33 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_34 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_35 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_36 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_37 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_38 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_39 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_40 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_41 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_42 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_43 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_44 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_45 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_46 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_47 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_48 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_49 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_50 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_51 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_52 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_53 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_54 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_55 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_56 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_57 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_58 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_59 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_60 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_61 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_62 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_63 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_64 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_65 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_66 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_67 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_68 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_69 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_70 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_71 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_72 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_73 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_74 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_75 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_76 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_77 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_78 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_79 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_80 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_81 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_82 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_83 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_84 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_85 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_86 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_87 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_88 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_89 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_90 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_92 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_93 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_94 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_95 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_96 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_97 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_98 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_99 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_100 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_101 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_102 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_103 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_104 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_105 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_106 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_107 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_108 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_109 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_110 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_111 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_112 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_113 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_114 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_115 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_116 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_117 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_119 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_120 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_121 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_122 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_123 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_124 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_125 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_126 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_127 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_128 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_129 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_130 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_131 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_132 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_133 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_134 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_135 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_136 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_137 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_138 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_139 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_140 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_141 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_142 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_143 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_144 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_145 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_146 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_147 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_148 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_149 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_150 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_151 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_152 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_153 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_154 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_155 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_156 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_157 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_159 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_160 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_161 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_162 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_163 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_164 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_165 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_166 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_167 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_168 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_169 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_170 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_171 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_172 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_173 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_174 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_175 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_176 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_177 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_178 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_180 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_181 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_182 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_183 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_184 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_185 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_186 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_187 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_188 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_189 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_190 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_191 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_192 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_193 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_194 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_195 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_196 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_197 | 1.0 | 0.0 | 1.0 |
| LHJHHAFO_198 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_199 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_200 | 0.0 | 1.0 | 0.0 |
| LHJHHAFO_201 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHJHHAFO_1 | 44378 | 54484 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)