Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPPCAGAM_42 | 84848 | 85750 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPPCAGAM_42 | 84848 | 85750 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| JPPCAGAM_42 | 626 | 1576 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| JPPCAGAM_42 | 626 | 1576 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| JPPCAGAM_42 | 626 | 1576 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| JPPCAGAM_42 | 626 | 1576 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPPCAGAM_42 | 84848 | 85747 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| JPPCAGAM_42 | 625 | 1578 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JPPCAGAM_1 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_2 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_3 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_4 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_5 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_6 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_7 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_8 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_9 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_10 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_11 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_12 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_13 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_14 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_15 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_16 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_17 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_18 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_19 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_20 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_21 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_22 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_23 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_24 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_25 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_26 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_27 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_28 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_29 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_30 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_31 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_32 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_33 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_34 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_35 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_36 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_37 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_38 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_39 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_40 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_41 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_42 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_43 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_44 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_45 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_46 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_47 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_48 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_49 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_50 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_51 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_52 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_53 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_54 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_55 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_56 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_57 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_58 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_59 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_60 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_61 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_62 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_63 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_64 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_65 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_66 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_67 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_68 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_69 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_70 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_71 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_72 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_73 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_74 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_75 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_76 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_77 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_78 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_79 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_80 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_81 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_82 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_83 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_84 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_85 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_86 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_87 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_88 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_89 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_90 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_91 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_92 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_93 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_94 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_95 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_96 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_97 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_98 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_99 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_100 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_101 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_102 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_103 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_104 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_105 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_106 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_107 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_108 | 1.0 | 0.0 | 1.0 |
| JPPCAGAM_109 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_110 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_111 | 0.0 | 1.0 | 0.0 |
| JPPCAGAM_112 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JPPCAGAM_46 | 12376 | 20865 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)