Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PECFHHJK_98 | 2986 | 3782 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 91.47 | 99.50 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PECFHHJK_98 | 2986 | 3783 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PECFHHJK_90 | 35427 | 33847 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.64 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PECFHHJK_155 | 156 | 736 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PECFHHJK_1 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_2 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_3 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_4 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_5 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_6 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_7 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_8 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_9 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_10 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_11 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_12 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_13 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_14 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_15 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_16 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_17 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_18 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_19 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_20 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_21 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_22 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_23 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_24 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_25 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_26 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_27 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_28 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_29 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_30 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_31 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_32 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_33 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_34 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_35 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_36 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_37 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_38 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_39 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_40 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_41 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_42 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_43 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_44 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_45 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_46 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_47 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_48 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_49 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_50 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_51 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_52 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_53 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_54 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_55 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_56 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_57 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_58 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_59 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_60 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_61 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_62 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_63 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_64 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_65 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_66 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_67 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_68 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_69 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_70 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_71 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_72 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_73 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_74 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_75 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_76 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_77 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_78 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_79 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_80 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_81 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_82 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_83 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_84 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_85 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_86 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_87 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_88 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_89 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_90 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_91 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_92 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_93 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_94 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_95 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_96 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_97 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_98 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_99 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_100 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_101 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_102 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_103 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_104 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_105 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_106 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_107 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_108 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_109 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_110 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_111 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_112 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_113 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_114 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_115 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_116 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_117 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_118 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_119 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_120 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_121 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_122 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_123 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_124 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_125 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_126 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_127 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_128 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_129 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_130 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_131 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_132 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_133 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_134 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_135 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_136 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_137 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_138 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_139 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_140 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_141 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_142 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_143 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_144 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_145 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_146 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_147 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_148 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_149 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_150 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_151 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_152 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_153 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_154 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_155 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_156 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_157 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_158 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_159 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_160 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_161 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_162 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_163 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_164 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_165 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_166 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_167 | 1.0 | 0.0 | 1.0 |
| PECFHHJK_168 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_169 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_170 | 0.0 | 1.0 | 0.0 |
| PECFHHJK_171 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PECFHHJK_53 | 80980 | 84545 | False | Unknown | VOG6823 |
Phigaro v2.4.0 (Database: Jan. 2024 release)