Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONKPDECO_31 | 8914 | 9879 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| ONKPDECO_29 | 301 | 1203 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ONKPDECO_31 | 8914 | 9879 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| ONKPDECO_31 | 8914 | 9879 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| ONKPDECO_31 | 8914 | 9879 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| ONKPDECO_31 | 8914 | 9879 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| ONKPDECO_29 | 301 | 1203 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ONKPDECO_31 | 8914 | 9876 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| ONKPDECO_29 | 301 | 1200 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ONKPDECO_1 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_2 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_3 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_4 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_5 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_6 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_7 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_8 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_9 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_10 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_11 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_12 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_13 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_14 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_15 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_16 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_17 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_18 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_19 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_20 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_21 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_22 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_23 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_24 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_25 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_26 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_27 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_28 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_29 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_30 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_31 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_32 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_33 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_34 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_35 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_36 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_37 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_38 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_39 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_40 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_41 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_42 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_43 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_44 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_45 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_46 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_47 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_48 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_49 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_50 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_51 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_52 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_53 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_54 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_55 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_56 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_57 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_58 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_59 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_60 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_61 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_62 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_63 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_64 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_65 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_66 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_67 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_68 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_69 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_70 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_71 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_72 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_73 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_74 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_75 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_76 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_77 | 1.0 | 0.0 | 1.0 |
| ONKPDECO_78 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_79 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_80 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_81 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_82 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_83 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_84 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_85 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_86 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_87 | 0.0 | 1.0 | 0.0 |
| ONKPDECO_88 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ONKPDECO_22 | 13392 | 21980 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)