Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLCFNLNH_32 | 91551 | 92453 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| OLCFNLNH_17 | 14711 | 16630 | tet(M) | ARO:3000186 | tet(M) | 98.59 | 100.00 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OLCFNLNH_32 | 91551 | 92453 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
| OLCFNLNH_17 | 14711 | 16630 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X92947 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OLCFNLNH_32 | 91554 | 92453 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| OLCFNLNH_17 | 14711 | 16627 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691736.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OLCFNLNH_32 | 4832 | 6025 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| OLCFNLNH_32 | 4832 | 6025 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| OLCFNLNH_32 | 4832 | 6025 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OLCFNLNH_17 | 5232 | 6437 | repUS43 | 1206 / 1206 | 100.00 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OLCFNLNH_1 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_2 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_3 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_4 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_5 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_6 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_7 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_8 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_9 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_10 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_11 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_12 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_13 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_14 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_15 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_16 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_17 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_18 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_19 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_20 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_21 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_22 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_23 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_24 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_25 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_26 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_27 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_28 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_29 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_30 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_31 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_32 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_33 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_34 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_35 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_36 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_37 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_38 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_39 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_40 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_41 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_42 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_43 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_44 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_45 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_46 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_47 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_48 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_49 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_50 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_51 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_52 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_53 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_54 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_55 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_56 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_57 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_59 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_60 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_61 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_62 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_63 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_64 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_65 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_66 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_67 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_68 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_69 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_70 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_71 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_72 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_73 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_74 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_75 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_76 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_77 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_78 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_79 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_80 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_81 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_82 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_83 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_84 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_85 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_86 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_87 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_88 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_89 | 1.0 | 0.0 | 1.0 |
| OLCFNLNH_90 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_91 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_92 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_93 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_94 | 0.0 | 1.0 | 0.0 |
| OLCFNLNH_95 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OLCFNLNH_39 | 13392 | 21881 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)