Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBGAJJJJ_6 | 160323 | 161060 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CBGAJJJJ_6 | 157371 | 158621 | cfr(C) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 100.00 | 100.00 | CANB01000378 |
| CBGAJJJJ_6 | 160323 | 161060 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CBGAJJJJ_6 | 160326 | 161060 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
| CBGAJJJJ_6 | 157533 | 158621 | cfr(C) | 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(C) | BLASTX | 97.25 | 95.78 | WP_111690898.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CBGAJJJJ_1 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_2 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_3 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_4 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_5 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_6 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_7 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_8 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_9 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_10 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_11 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_12 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_13 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_14 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_15 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_16 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_17 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_18 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_19 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_20 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_21 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_22 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_23 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_24 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_25 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_26 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_27 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_28 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_29 | 1.0 | 0.0 | 1.0 |
| CBGAJJJJ_30 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_31 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_32 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_33 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_34 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_36 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_37 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_38 | 0.0 | 1.0 | 0.0 |
| CBGAJJJJ_39 | 1.0 | 0.0 | 1.0 |
| CBGAJJJJ_41 | 1.0 | 0.0 | 1.0 |
| CBGAJJJJ_42 | 1.0 | 0.0 | 1.0 |
| CBGAJJJJ_43 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CBGAJJJJ_1 | 122222 | 134544 | False | Siphoviridae | VOG6349, |
| CBGAJJJJ_1 | 389248 | 400400 | False | Unknown | VOG1051, |
| CBGAJJJJ_2 | 23984 | 54174 | False | Myoviridae | VOG0044, |
| CBGAJJJJ_3 | 25269 | 55446 | False | Siphoviridae | VOG6466, |
| CBGAJJJJ_5 | 100576 | 108527 | True | Siphoviridae | VOG8643, |
| CBGAJJJJ_6 | 153948 | 167977 | True | Siphoviridae | VOG0221, |
| CBGAJJJJ_22 | 4707 | 15702 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)