Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJPABOP_6 | 36909 | 37646 | ErmB | ARO:3000375 | ErmB | 98.78 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NEJPABOP_6 | 39348 | 40598 | cfr(C) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 100.00 | 100.00 | CANB01000378 |
| NEJPABOP_6 | 36909 | 37646 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | U18931 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NEJPABOP_6 | 36909 | 37643 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_002292226.1 |
| NEJPABOP_6 | 39348 | 40436 | cfr(C) | 23S rRNA (adenine(2503)-C(8))-methyltransferase Cfr(C) | BLASTX | 97.25 | 95.78 | WP_111690898.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEJPABOP_1 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_2 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_3 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_4 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_5 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_6 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_7 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_8 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_9 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_10 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_11 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_12 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_13 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_14 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_15 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_16 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_17 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_18 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_19 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_20 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_21 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_22 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_23 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_24 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_25 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_26 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_27 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_28 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_29 | 1.0 | 0.0 | 1.0 |
| NEJPABOP_30 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_31 | 1.0 | 0.0 | 1.0 |
| NEJPABOP_32 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_33 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_34 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_35 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_36 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_38 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_39 | 1.0 | 0.0 | 1.0 |
| NEJPABOP_40 | 0.0 | 1.0 | 0.0 |
| NEJPABOP_41 | 1.0 | 0.0 | 1.0 |
| NEJPABOP_43 | 1.0 | 0.0 | 1.0 |
| NEJPABOP_44 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEJPABOP_1 | 23985 | 54175 | False | Myoviridae | VOG0044, |
| NEJPABOP_4 | 122222 | 134544 | False | Siphoviridae | VOG6349, |
| NEJPABOP_5 | 89945 | 97896 | True | Siphoviridae | VOG8643, |
| NEJPABOP_6 | 29990 | 44019 | False | Siphoviridae | VOG8241, |
| NEJPABOP_12 | 25269 | 55443 | False | Siphoviridae | VOG6466, |
| NEJPABOP_23 | 7154 | 18149 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)