Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MEFDBDGO_4 | 358520 | 359224 | WalR | 4.44e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| MEFDBDGO_10 | 85837 | 85643 | CspR | 5.78e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| MEFDBDGO_10 | 85837 | 85640 | CspA | 8.86e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEFDBDGO_1 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_2 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_3 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_4 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_5 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_6 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_7 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_8 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_9 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_10 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_11 | 0.0 | 1.0 | 0.0 |
| MEFDBDGO_12 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MEFDBDGO_1 | 148188 | 176997 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG6540, VOG4615, VOG0753, VOG0054 |
| MEFDBDGO_1 | 448613 | 485299 | False | Siphoviridae | VOG2786, VOG11003, VOG11003, VOG11075, VOG9655, VOG3549, VOG1250, VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG6005, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054, VOG0866, VOG6055 |
Phigaro v2.4.0 (Database: Jan. 2024 release)