Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLIFIDEN_33 | 373019 | 374224 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| JLIFIDEN_33 | 351069 | 351971 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| JLIFIDEN_20 | 3886 | 5859 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JLIFIDEN_33 | 351069 | 351971 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| JLIFIDEN_20 | 3886 | 5811 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JLIFIDEN_33 | 351072 | 351971 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| JLIFIDEN_33 | 374249 | 374758 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| JLIFIDEN_20 | 3889 | 5811 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| JLIFIDEN_33 | 373019 | 374221 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JLIFIDEN_1 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_2 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_3 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_4 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_5 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_6 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_7 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_8 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_9 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_10 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_11 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_12 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_13 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_14 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_15 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_16 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_18 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_19 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_20 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_22 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_23 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_24 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_25 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_28 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_31 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_32 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_33 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_35 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_36 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_39 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_40 | 1.0 | 0.0 | 1.0 |
| JLIFIDEN_41 | 0.0 | 1.0 | 0.0 |
| JLIFIDEN_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JLIFIDEN_11 | 525402 | 537393 | False | Unknown | VOG0572, |
| JLIFIDEN_24 | 695814 | 703999 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)