Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 3 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NLJEIJJN_16 | 42770 | 42066 | WalR | 4.49e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| NLJEIJJN_44 | 2368 | 2733 | rplN | 8.29e-66 | 50S ribosomal protein | 87.70 | 100.00 | CAE43883 |
| NLJEIJJN_2 | 5419 | 5613 | CspR | 4.69e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| NLJEIJJN_2 | 5419 | 5616 | CspA | 7.19e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NLJEIJJN_60 | 74 | 1009 | rep28 | 936 / 936 | 100.00 | CP005948 |
| NLJEIJJN_55 | 1116 | 2069 | repUS64 | 954 / 954 | 97.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NLJEIJJN_1 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_2 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_13 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_16 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_17 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_18 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_19 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_20 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_21 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_22 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_23 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_24 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_25 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_26 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_27 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_28 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_29 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_30 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_31 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_32 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_33 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_34 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_35 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_36 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_37 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_38 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_39 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_40 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_41 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_42 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_43 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_44 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_45 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_46 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_47 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_48 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_49 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_50 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_51 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_52 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_53 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_54 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_55 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_56 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_57 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_58 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_59 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_60 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_61 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_62 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_63 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_65 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_66 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_67 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_68 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_69 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_70 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_71 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_72 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_73 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_74 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_75 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_76 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_77 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_78 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_79 | 1.0 | 0.0 | 1.0 |
| NLJEIJJN_88 | 0.0 | 1.0 | 0.0 |
| NLJEIJJN_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NLJEIJJN_16 | 44013 | 56282 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG5088, VOG4841, VOG0205, VOG6414, VOG4609, VOG4632 |
| NLJEIJJN_26 | 9966 | 37619 | False | Siphoviridae | VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0044, VOG3643, VOG4673, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917 |
| NLJEIJJN_32 | 3322 | 30419 | False | Siphoviridae | VOG8870, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4568, VOG4556, VOG6939, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0189, VOG4566, VOG0514, VOG10904 |
Phigaro v2.4.0 (Database: Jan. 2024 release)