Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 8 | 0 | 0 | 8.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGNKOAAK_3 | 1517565 | 1518530 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_1 | 1251056 | 1252021 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_2 | 901750 | 902715 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_3 | 878179 | 879144 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_2 | 829422 | 830387 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_3 | 650222 | 651187 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_3 | 342575 | 343540 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
| KGNKOAAK_1 | 168529 | 169494 | CfxA3 | ARO:3003003 | CfxA3 | 100.00 | 100.00 | AF472622.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGNKOAAK_1 | 1251056 | 1252021 | cfxA3 | Ampicillin | 100.00 | 100.00 | AF472622 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGNKOAAK_1 | 1251056 | 1252018 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_1 | 168532 | 169494 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_2 | 829422 | 830384 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_2 | 901750 | 902712 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_3 | 1517568 | 1518530 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_3 | 342575 | 343537 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_3 | 650225 | 651187 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
| KGNKOAAK_3 | 878179 | 879141 | cfxA3 | extended-spectrum class A beta-lactamase CfxA3 | EXACTX | 100.00 | 100.00 | WP_004348227.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KGNKOAAK_13 | 3222 | 3802 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGNKOAAK_1 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_2 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_3 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_4 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_5 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_6 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_7 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_8 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_9 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_10 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_11 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_12 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_13 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_15 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_16 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_17 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_18 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_19 | 1.0 | 0.0 | 1.0 |
| KGNKOAAK_20 | 0.0 | 1.0 | 0.0 |
| KGNKOAAK_21 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)