Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLKGMHMK_1 | 1569153 | 1570118 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| PLKGMHMK_1 | 1003098 | 1003832 | ErmG | ARO:3000522 | ErmG | 97.95 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLKGMHMK_1 | 1569153 | 1570118 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| PLKGMHMK_1 | 1569153 | 1570118 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| PLKGMHMK_1 | 1569153 | 1570118 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| PLKGMHMK_1 | 1569153 | 1570118 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| PLKGMHMK_1 | 1003098 | 1003832 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.05 | 100.00 | M15332 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLKGMHMK_1 | 1569153 | 1570115 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| PLKGMHMK_1 | 1003101 | 1003832 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 98.36 | 100.00 | WP_063844791.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLKGMHMK_1 | 693691 | 695271 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLKGMHMK_1 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_2 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_3 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_4 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_5 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_6 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_7 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_8 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_9 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_10 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_11 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_12 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_13 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_14 | 0.0 | 1.0 | 0.0 |
| PLKGMHMK_15 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_16 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_17 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_19 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_20 | 1.0 | 0.0 | 1.0 |
| PLKGMHMK_21 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLKGMHMK_1 | 73026 | 86038 | False | Myoviridae | VOG4572, |
| PLKGMHMK_1 | 933841 | 946542 | True | Siphoviridae | VOG4650, |
| PLKGMHMK_3 | 163280 | 168843 | True | Unknown | VOG8904, |
Phigaro v2.4.0 (Database: Jan. 2024 release)