Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BNFIBJCA_65 | 76195 | 75491 | WalR | 9.77e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| BNFIBJCA_44 | 14030 | 13836 | CspR | 1.14e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BNFIBJCA_44 | 14030 | 13833 | CspA | 1.75e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BNFIBJCA_13 | 33386 | 34292 | rep38 | 909 / 903 | 95.60 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BNFIBJCA_1 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_2 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_3 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_4 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_5 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_6 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_7 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_8 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_9 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_10 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_11 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_12 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_13 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_14 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_15 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_16 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_17 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_18 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_19 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_20 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_21 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_22 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_23 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_24 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_25 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_26 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_27 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_28 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_30 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_31 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_32 | 1.0 | 0.0 | 1.0 |
| BNFIBJCA_33 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_35 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_44 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_55 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_64 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_65 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_66 | 0.0 | 1.0 | 0.0 |
| BNFIBJCA_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BNFIBJCA_11 | 389142 | 422775 | False | Siphoviridae | VOG1191, VOG8294, VOG0602, VOG9888, VOG8917, VOG9997, VOG3498, VOG4619, VOG0801, VOG6163, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6154, VOG1637, VOG4673, VOG1049, VOG3643, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321 |
| BNFIBJCA_22 | 48961 | 72290 | False | Siphoviridae | VOG10015, VOG9459, VOG0044, VOG0634, VOG1049, VOG0198, VOG4841, VOG0741, VOG7810, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599 |
| BNFIBJCA_55 | 9797 | 67693 | False | Siphoviridae | VOG4632, VOG0205, VOG4841, VOG4581, VOG4544, VOG2935, VOG4556, VOG4553, VOG0204, VOG0198, VOG3477, VOG8551, VOG0275, VOG6422, VOG1347, VOG7508, VOG7508, VOG4602, VOG6495, VOG6495, VOG11003, VOG6495, VOG0513, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566, VOG4552, VOG4693, VOG3480, VOG5878, VOG0198, VOG9295, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)