Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ILFCDFMF_78 | 15020 | 14823 | CspA | 4.48e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
| ILFCDFMF_78 | 15020 | 14826 | CspR | 1.33e-29 | cold shock protein | 86.15 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ILFCDFMF_11 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_21 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_32 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_43 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_47 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_48 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_49 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_50 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_51 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_52 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_53 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_54 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_55 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_56 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_57 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_58 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_59 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_60 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_61 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_62 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_63 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_64 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_65 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_66 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_67 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_68 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_69 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_70 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_71 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_72 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_73 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_74 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_75 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_76 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_77 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_78 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_79 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_80 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_81 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_82 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_83 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_84 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_85 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_86 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_87 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_88 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_89 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_90 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_91 | 1.0 | 0.0 | 1.0 |
| ILFCDFMF_92 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_93 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_94 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_96 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_97 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_98 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_99 | 1.0 | 0.0 | 1.0 |
| ILFCDFMF_100 | 1.0 | 0.0 | 1.0 |
| ILFCDFMF_101 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_102 | 1.0 | 0.0 | 1.0 |
| ILFCDFMF_108 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_119 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_130 | 0.0 | 1.0 | 0.0 |
| ILFCDFMF_141 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ILFCDFMF_56 | 10053 | 14477 | False | Siphoviridae | VOG0650, VOG4632, VOG4999, VOG8353 |
| ILFCDFMF_65 | 6932 | 13051 | False | Myoviridae | VOG0205, VOG0384, VOG0382 |
| ILFCDFMF_75 | 4004 | 12159 | False | Siphoviridae | VOG0198, VOG4799, VOG0226, VOG0186, VOG1309, VOG2228, VOG4552, VOG3622, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)