Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HGGNKDIJ_2 | 35196 | 34492 | WalR | 9.15e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| HGGNKDIJ_1 | 232133 | 232327 | CspR | 1.42e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| HGGNKDIJ_1 | 232133 | 232330 | CspA | 2.17e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HGGNKDIJ_1 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_2 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_3 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_4 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_5 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_6 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_7 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_8 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_9 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_10 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_11 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_12 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_13 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_14 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_15 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_16 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_17 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_18 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_19 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_20 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_21 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_22 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_23 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_24 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_25 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_26 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_27 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_28 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_29 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_30 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_32 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_33 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_34 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_35 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_36 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_38 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_39 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_40 | 1.0 | 0.0 | 1.0 |
| HGGNKDIJ_44 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_52 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_53 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_54 | 0.0 | 1.0 | 0.0 |
| HGGNKDIJ_55 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HGGNKDIJ_2 | 35800 | 47018 | False | Siphoviridae | VOG8908, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG6414, VOG4609 |
| HGGNKDIJ_4 | 2359 | 30089 | False | Siphoviridae | VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637, VOG0054 |
| HGGNKDIJ_5 | 70170 | 93010 | False | Siphoviridae | VOG1637, VOG4619, VOG0801, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG0611, VOG0418 |
Phigaro v2.4.0 (Database: Jan. 2024 release)