Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IKJCJEDI_7 | 106584 | 107288 | WalR | 8.29e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IKJCJEDI_14 | 634467 | 634273 | CspR | 3.42e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IKJCJEDI_14 | 634467 | 634270 | CspA | 5.24e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKJCJEDI_1 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_2 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_4 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_5 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_6 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_7 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_8 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_9 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_10 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_11 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_12 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_13 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_14 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_15 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_16 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_17 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_18 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_19 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_20 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_21 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_22 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_24 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_25 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_26 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_27 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_28 | 1.0 | 0.0 | 1.0 |
| IKJCJEDI_30 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_33 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_35 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_42 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_43 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_45 | 0.0 | 1.0 | 0.0 |
| IKJCJEDI_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IKJCJEDI_45 | 76702 | 105105 | False | Siphoviridae | VOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0198, VOG8670, VOG4841, VOG4581, VOG1886, VOG6939, VOG4556, VOG4568, VOG4553, VOG0204, VOG0205, VOG8239, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870 |
Phigaro v2.4.0 (Database: Jan. 2024 release)