Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LHAJHOAF_4 | 55780 | 55076 | WalR | 3.88e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| LHAJHOAF_44 | 178731 | 178537 | CspR | 1.27e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LHAJHOAF_44 | 178731 | 178534 | CspA | 1.94e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LHAJHOAF_1 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_2 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_3 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_4 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_5 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_6 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_7 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_8 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_9 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_10 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_11 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_12 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_13 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_14 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_15 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_16 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_18 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_19 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_20 | 1.0 | 0.0 | 1.0 |
| LHAJHOAF_22 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_33 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_44 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_49 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_50 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_51 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_52 | 0.0 | 1.0 | 0.0 |
| LHAJHOAF_53 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LHAJHOAF_1 | 49301 | 74413 | False | Siphoviridae | VOG10015, VOG9459, VOG0044, VOG0634, VOG1049, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599, VOG10957 |
| LHAJHOAF_4 | 57316 | 67311 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609 |
| LHAJHOAF_11 | 149466 | 186604 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG9295, VOG0198, VOG4693, VOG0189, VOG5046, VOG6495, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495, VOG11003 |
| LHAJHOAF_11 | 192256 | 204259 | False | Siphoviridae | VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205 |
| LHAJHOAF_50 | 200722 | 214901 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586 |
Phigaro v2.4.0 (Database: Jan. 2024 release)